Logging started at 11:06:14 on 12 Aug 2016
QIIME version: 1.9.1

qiime_config values:
pick_otus_reference_seqs_fp	/usr/local/lib/python2.7/dist-packages/qiime_default_reference/gg_13_8_otus/rep_set/97_otus.fasta
sc_queue	all.q
pynast_template_alignment_fp	/usr/local/lib/python2.7/dist-packages/qiime_default_reference/gg_13_8_otus/rep_set_aligned/85_otus.pynast.fasta
cluster_jobs_fp	start_parallel_jobs.py
assign_taxonomy_reference_seqs_fp	/usr/local/lib/python2.7/dist-packages/qiime_default_reference/gg_13_8_otus/rep_set/97_otus.fasta
torque_queue	friendlyq
jobs_to_start	1
denoiser_min_per_core	50
assign_taxonomy_id_to_taxonomy_fp	/usr/local/lib/python2.7/dist-packages/qiime_default_reference/gg_13_8_otus/taxonomy/97_otu_taxonomy.txt
temp_dir	/tmp/
blastall_fp	blastall
seconds_to_sleep	1

parameter file values:
beta_diversity:metrics	unweighted_unifrac,weighted_unifrac,bray_curtis
parallel:jobs_to_start	16

Input file md5 sums:
/home/gerben/qiime/wo_linker/Reference_and_sequenced_data_0.001.biom: c3dddac15ef6011434a849f49b64d68b
/home/gerben/qiime/mapping_all.txt: 4ef52b4d855c9558e653fa6b4d20a00f
/usr/local/lib/python2.7/dist-packages/qiime_default_reference/gg_13_8_otus/trees/97_otus.tree: b7e76593bce82913af1cfb06edf15732

Executing commands.

# Sample OTU table at 10000 seqs/sample command 
single_rarefaction.py -i /home/gerben/qiime/wo_linker/Reference_and_sequenced_data_0.001.biom -o /home/gerben/qiime/wo_linker/beta_div_even10000_reference_and_sequenced_data_0.001/Reference_and_sequenced_data_0.001_even10000.biom -d 10000

Stdout:

Stderr:

# Beta Diversity (unweighted_unifrac) command 
parallel_beta_diversity.py -i /home/gerben/qiime/wo_linker/beta_div_even10000_reference_and_sequenced_data_0.001/Reference_and_sequenced_data_0.001_even10000.biom -o /home/gerben/qiime/wo_linker/beta_div_even10000_reference_and_sequenced_data_0.001 --metrics unweighted_unifrac -T  -t /usr/local/lib/python2.7/dist-packages/qiime_default_reference/gg_13_8_otus/trees/97_otus.tree --jobs_to_start 16

